Seoul National University Biological Sciences Website

Lab Publications

Plant Systems Genetics Lab

Annu Rev Cell Dev Biol

Caño-Delgado A*, Lee JY*, Demura T* (2010). Regulatory mechanisms for specification and patterning of plant vascular tissues. Annu Rev Cell Dev Biol, 26: 605-637 (*equal contribution).

Biology Open

Cecilia Aliaga Fandino, Hyoujin Kim, Jesse David Rademaker, Ji-Young Lee (2019). Reprogramming of the cambium regulators during adventitious root development upon wounding of storage tap roots in radish (Raphanus sativus L.).. Biology Open, 12: bio039677.

Ricardo S. Randall, Shunsuke Miyashima, Tiina Blomster, Jing Zhang, Annakaisa Elo, Anna Karlberg, Juha Immanen, Kaisa Nieminen, Ji-Young Lee, Tatsuo Kakimoto, Karolina Blajecka, Charles W. Melnyk, Annette Alcasabas, Celine Forzani, Miho Matsumoto-Kitano, (2015). AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins. Biology Open, 4: 1229-1236.

Current Biology

Nam V. Hoang §, Goh Choe §, Yi Zheng §, Ana Cecilia Aliaga Fandiño ⱡ, Inyoung Sung ⱡ, Jaeryung Hur ⱡ, Muhammad Kamran ⱡ, Chulmin Park, Hyoujin Kim, Hongryul Ahn, Sun Kim, Zhangjun Fei and Ji-Young Lee (2020). Identification of conserved gene-regulatory networks that integrate environmental sensing and growth in the root cambium. Current Biology, 30: 2887-2900 (§,ⱡ equal contribution).

Current Opinion in Plant Biology

Minji Seo§, Hyoujin Kim§ and Ji-Young Lee (2020). Information on the move: Vascular tissue development in space and time during postembryonic root growth. Current Opinion in Plant Biology, 57: 110-117(§ These authors contributed equally.).

Goh Choe*, Ji-Young Lee* (2017). Push–pull strategy in the regulation of postembryonic root development. Current Opinion in Plant Biology, 35: 158-164 (* equal contribution).

eLS

Jose Sebastian, Ji-Young Lee (2013). Root Apical Meristems. eLS, : DOI: 10.1002/9780470015902.a00.

EMBO Journal

Shusuke Miyashima*, Jose Sebastian*, Ji-Young Lee, Yka Helariutta (2013). Stem cell function during the plant vascular development. EMBO Journal, 32: 178-193 (* equal contribution).

Frontiers in Plant Science

Minji Seo, Ji-Young Lee (2021). Dissection of Functional Modules of AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4 in the Development of the Root Xylem. Frontiers in Plant Science, 12: 632078.

Nam V. Hoang, Chulmin Park, Muhammad Kamran and Ji-Young Lee (2020). Gene regulatory network guided investigations and engineering of storage root development in root crops. Frontiers in Plant Science, 11: 762.

Genesis

Zhou J*, Sebastian J*, Lee JY (2011). Signaling and gene regulatory programs in plant vascular stem cells. Genesis, 49: 885-904 (*equal contribution).

Journal of Experimental Botany

Geupil Jang, Jung-Hun Lee, Khushboo Rastogi, Suhyoung Park, Sang-Hun Oh, Ji-Young Lee (2015). Cytokinin-dependent secondary growth determines root biomass in radish (Raphanus sativus L.). Journal of Experimental Botany, 66: 4607-4619.

Journal of Plant Biology

Hyoujin Kim, Ji‑Young Lee (2022). A Method for a Rapid and Accurate Detection of Phloem Sieve Element Development: Its Application and Scalability. Journal of Plant Biology, 65: 1-10.

Molecules and Cells

Souvik Dhar and Ji-Young Lee (2022). How Does Global Warming Sabotage Plant Immunity?. Molecules and Cells, 45: 883-885.

Souvik Dhar, Hyoujin Kim, Cécile Segonzac, Ji-Young Lee (2021). The danger-associated peptide PEP1 directs cellular reprogramming in the Arabidopsis root vascular system. Molecules and Cells, 44: 830-842.

Nature

Carlsbecker A*, Lee JY*, Roberts CJ, Dettmer J, Lehesranta S, Zhou J, Lindgren O, Moreno-Risueno MA, Vatén A, Thitamadee S, Campilho A, Sebastian J, Bowman JL, Helariutta Y*, Benfey PN* (2010). Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature, 465: 316-321 (*equal contribution).

Nature Plants

Jing Zhang, Gugan Eswaran, Juan Alonso-Serra, Melis Kucukoglu, Jiale Xiang, Weibing Yang, Annakaisa Elo, Kaisa Nieminen, Teddy Damén, Je-Gun Joung, Jae-Young Yun, Jung-Hun Lee, Laura Ragni, Pierre Barbier de Reuille, Sebastian Ahnert, Ji-Young Lee#, Ari Pekka Mähönen#, and Ykä Helariutta# (2019). Transcriptional regulatory framework for vascular cambium development in Arabidopsis roots. Nature Plants, 5: 1033-1042.

Physiologia Plantarum

Eun-Sol Kim*, Goh Choe*, Jose Sebastian*, Kook Hui Ryu, Linyong Mao, Zhangjun Fei, Ji-Young Lee (2016). HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots. Physiologia Plantarum, 157: 221-233 (*equal contribution).

Geupil Jang, Ji-Young Lee (2014). Intercellular trafficking of transcription factors in the vascular tissue patterning. Physiologia Plantarum, 151: 184-191.

Planta

Chulmin Park, Youbong Hyun, Ji-Young Lee (2024). Female gametophyte development is required for nucellar tip degeneration during Arabidopsis ovule development. Planta, 260: 87.

PLOS Genetics

Jose Sebastian, Kook-Hui Ryu, Jing Zhou, Danuse Tarkowska, PetrTarkowski, Young-Hee Cho, Sang-Dong Yoo, Eun-Sol Kim, Ji-Young Lee (2015). PHABULOSA Controls the Quiescent Center-independent Root Meristem Activities in Arabidopsis thaliana. PLOS Genetics, 11: e1004973.

Scientific Reports

Youngsuk Lee, Nam V. Hoang, Van Giap Do, Toshi M. Foster, Tony K. McGhie, Seonae Kim, Sang Jin Yang, Ju-Hyeon Park, Jongsung Park, Ji-Young Lee (2023). Identification of genes associated with the regulation of cold tolerance and the RNA movement in the grafted apple. Scientific Reports, 13: 11583.

STAR Protocols

Goh Choe, Nam V. Hoang and Ji-Young Lee (2020). An optimized protocol of laser capture microdissection for tissue-specific RNA profiling in a radish tap root. STAR Protocols, 1: 100110.

The Plant Cell

Hyoujin Kim§, Jing Zhou§, Deepak Kumar, Geupil Jang, Kook Hui Ryu, Jose Sebastian, Shunsuke Miyashima, Ykä Helariutta, Ji-Young Lee (2020). SHORTROOT-Mediated Intercellular Signals Coordinate Phloem Development in Arabidopsis Roots. The Plant Cell, 32: 1519-1535 (§ equal contribution).

Jing Zhou, Xu Wang, Jung-Youn Lee, Ji-Young Lee (2013). Cell-to-cell movement of two interacting AT-hook factors in Arabidopsis root vascular tissue patterning. The Plant Cell, 25: 187-201.

The Plant Journal

Nam V. Hoang, Suhyoung Park, Chulmin Park, Hannah Suh, Sang-Tae Kim, Eunyoung Chae, Byoung-Cheorl Kang, Ji-Young Lee (2022). Oxidative stress response and programmed cell death guided by NAC013 modulate pithiness in radish taproots. The Plant Journal, 109: 144-163.