Seoul National University Biological Sciences Website

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Laboratory of Evolution and Phylogenomics

2024

Lim W, Bang W, Baek M, Park S, Shin S, "Phylogeny and evolution of larval feeding mode in the megadiverse superfamily Sciaroidea (Diptera)," Insect Systematics and Diversity, 8(6), ixae035, November 2024.

Choi J, Kang T, Park S, Shin S, "A chromosome-scale and annotated reference genome assembly of Plecia longiforceps Duda, 1934 (Diptera: Bibionidae)," Genome Biology and Evolution, (), evae205, September 2024.

Jung S, Kim S, Shin S, "Complete mitochondrial genome of Plecia longiforceps Duda, 1933 (Diptera, Bibionidae) and its implications for a phylogeny of the family Bibionidae," ZooKeys, 1212(1), 1-15, September 2024.

Shin S, Baker A, Enk J, McKenna D, Foquet B, Vandergast A, Weissman D, Song H, "Orthoptera-specific target enrichment (OR-TE) probes resolve relationships over broad phylogenetic scales," Scientific Reports, 14(1), 21377, September 2024.

Bang W, Seol A, Shin S, "Insights from multigene analysis: first report of a Southeast Asian Mosquito, Aedes (Mucidus) laniger (Diptera: Culicidae) on Jeju Island from Korea," Parasites & Vectors, 17(386), 1-12, September 2024.

Kim D, Kim G, Kim Y, Hwang U, Shin S, "The Introduction of Tettigonia jungi (Orthoptera: Tettigoniidae) from Jeju Island into Seoul and Isolation in Urban Habitat," Korean journal of applied entomology, 63(3), 163-167, September 2024.

Jung S, Kim SJ, Shin S, "Comparative transcriptomics suggests a potential realizator gene for carapace expansion in longtail tadpole shrimp, Triops longicaudatus (Branchiopoda: Notostraca)," Journal of Experimental Zoology Part B Molecular and Developmental Evolution, 2024(1), 1-9, August 2024.

Kim G, Kim D, Kim T, Shin S, "Taxonomic review of the genus Hexacentrus Serville, 1831 (Orthoptera: Tettigoniidae) in Korea: An integrative study to confirm cryptic species," Journal of Asia-Pacific Entomology, 27(2), 102249, June 2024.

Kim D, Kim S, Song H, Shin S, "Phylogeny and biogeography of the wingless orthopteran family Rhaphidophoridae," Communications Biology, 7(1), 401, April 2024.

2023

Haran J, Li R, ,Allio X, Shin S, Benoit L, Oberprieler RG, Farrell BD, Brown SDJ, Leschen RAB, Kergoat GJ, McKenna DD, "Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of brood-site pollination mutualism in true weevils," Proceedings of the Royal Society B: Biological Sciences, 290(2008), 20230889, October 2023.

Bang W, Shin S, "A new species of the Chaoborus flavicans complex (Diptera, Chaoboridae) in South Korea," Zootaxa, 5360(1), 57-81, October 2023.

Han S, Choi J, Shin S, "First record of Cordilura shatalkini Ozerov, 1997 and Cordilura nubecula Sasakawa, 1986 (Diptera: Scathophagidae) from Korea," Journal of Asia-Pacific Biodiversity, 16(3), 450-453, May 2023.

Lee S, Choi J, Jang H, Choi W, Kwon W, Kim D, Gim J, Park J, Park S, Kim S, Shin S, Lee S., "Establishment of non-native Anoplophora horsfieldii (Coleoptera: Cerambycidae) in South Korea," Journal of Integrated Pest Management, 14(1), 9, April 2023.

Choi J, Kim D, Shin S, "First Records of Clusia Haliday and Clusiodes Coquillett (Diptera: Clusiidae) from Korea," Journal of Asia-Pacific Entomology, 26(1), 102028, March 2023.

2022

Kim S, Jung S, Choi J, Tsai CL, Farrell BD, Shin S, "History Does Not Repeat Itself; It Rhymes: Range Expansion and Outbreak of Plecia longiforceps (Diptera: Bibionidae) in East Asia," Journal of Integrated Pest Management, 13(1), 31, December 2022.

Kim D, Kim B, Park T, Cho G, Kim T, Shin S, "First record of Teleogryllus (Brachyteleogryllus) marini (Orthoptera: Gryllidae) in korea and discussion of its continued misidentification using DNA barcoding," Journal of Asia-Pacific Entomology, 25(2022), 101959, July 2022.

Kim D, Sung W, Kim Y, Shin S, "The second introduction of a non-native Embioptera to Korea via ornamental plants: Evaluating DNA barcoding to prepare for a global inflow of unfamiliar taxa," Journal of Asia-Pacific Entomology, 25(2022), 101932, May 2022.

2021

Ashman LG, Shin S, Zwick A, Ślipiński A, McKenna DD, "The first phylogeny of Australasian Lamiinae longhorn beetles (Coleoptera: Cerambycidae) reveals poor tribal classification and a complex biogeographic history," Systematic Entomology, 47(1), 213-230, November 2021.

Baird HP, Shin S, et al., "Fifty million years of beetle evolution along the Antarctic Polar Front," PNAS, 118(24), e2017384118, June 2021.

Shin NR, Shin S, et al., "Larvae of longhorned beetles (Coleoptera; Cerambycidae) have evolved a diverse and phylogenetically conserved array of plant cell wall degrading enzymes," Systematic Entomology, 46(1), 784-797, May 2021.

Haddad S, Gutiérrez N, Noguera FA, Shin S, Svacha P, McKenna DD, "Phylogenetic placement of the enigmatic longhorned beetle Vesperoctenus flohri Bates (Vesperidae) and a first description of its female internal structures," Arthropod Systematics & Phylogeny, 79(1), 99-114, May 2021.

Shin S, "Phylogenomics yield new insights into the genomic basis of taxonomy and evolution of insect," 2021 Spring International Conference of KSAE, (), , April 2021.

Bayless KM , Trautwein MD, Meusemann K, Shin S, et al., "Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics," BMC biology, 1(19), 1-17, January 2021.

DB Weissman, AG Vandergast, H Song, S Shin, DD McKenna, ..., "Generic relationships of New World Jerusalem crickets (Orthoptera: Stenopelmatoidea: Stenopelmatinae), including all known species of Stenopelmatus," Zootaxa, (1)(4917), 1 - 122, 2021.

2020

Lia X, Teasdalea LC, Bayless KM, Ellis AG, Wiegmann BM, Lamas CE, Lambkin CL, Evenhuis NL, Nicholls JA, Hartley D, Shin S, Trautwein M, Zwick A, Lessard BD, Yeates DK., "Phylogenomics reveals accelerated late Cretaceous diversification of bee flies (Diptera: Bombyliidae)," Cladistics, (), , November 2020.

S Shin, "Phylogenomics reveals the systematics and evolution of Bibionomorpha (Diptera)," 2020 Fall International Conference of KSAE, (), , October 2020.

Song H, Béthoux O, Shin S, Donath A, Letsch H, Liu S, McKenna DM, Meng G, Misof B, Podsiadlowski L, Zhou X, Wipfler B, Simon S, "Phylogenomic analysis of Orthoptera sheds new light on the evolution of acoustic communication," Nature communication, (), , October 2020.

Shin S, Lee H, Menzel F, Lee S, "Taxonomic study on the Phytosciara genus group (Diptera: Sciaridae) in Korea, including the description of a new species," Journal of Asia-Pacific Entomology, (), , 2020.

2019

Shin S, Lee H, Lee S, "Proposal of a new subfamily of Sciaridae (Diptera: Sciaridae), with description of one new species from South Korea," Zootaxa, (), , 2019.

Seppey M, Ioannidis P, Emerson BC, Pitteloud C, Robinson-Rechavi M, Roux J, Escalona HE, McKenna DD, Misof B, Shin S, Zhou X, Waterhouse RM, Alvarez N., "Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles," Genome Biology, (), , 2019.

McKenna DD, Shin S (Co-first author), Ahrens D, Balke M, Beza-Beza C, Clarke DJ, Donath A, Escalona H, Friedrich F, Letsch H, Liu S, Maddison D, Mayer C, Misof B, Murin PJ, Niehuis O, Peters RS, Podsiadlowski L, Pohl H, Scully ED, Yan EV, Zhou X, Ślipiński A, Beutel RG., "The Evolution and Genomic Basis of Beetle Diversity," PNAS, (), , 2019.

2018

Mckenna DD, Clarke DJ, Anderson R, Astrin JJ, Brown S, Chamorro L, Davis SR, de Medeiros B, Guadalupe del Rio M, Haran J, Kuschel G, Franz N, Jordal B, Lanteri A, Leschen RAB, Letsch H, Lyal C, Marvaldi A, Mermudes JR, Oberprieler RG, Schütte A, Sequeira A, Shin S, Van Dam MH, Zhang G, "Morphological and Molecular Perspectives on the Phylogeny, Evolution, and Classification of Weevils (Coleoptera: Curculionoidea): Proceedings from the 2016 International Weevil Meeting," Diversity, (), , 2018.

Gillung JP, Winterton SL, Bayless KM, Khouri Z, Borowiec ML, Yeates D, Kimsey LS, Misof B, Shin S, Zhou X, Mayer C, Petersen M, Wiegmann BM, "Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids," Molecular Phylogenetics and Evolution, (), , 2018.

Haddad S, Shin S (Co-corresponding author), Lemmon AR, Moriarty Lemmon E, Svacha P, Farrell BD, Slipinski A, Windsor D, McKenna DD, "Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae)," Systematic Entomology, (), , 2018.

Choi H, Shin S (Co-first author), Jung S, Clarke DJ, Lee S., "Molecular phylogeny of Macrosiphini (Hemiptera: Aphididae): An evolutionary hypothesis for the Pterocomma-group habitat adaptation," Molecular Phylogenetics and Evolution, (), , 2018.

Shin S, Bayless KM, Winterton SL, Dikow T, Yeates DK, Lessard BD, Wiegmann BM, Trautwein MD., "Taxon sampling to address an ancient rapid radiation: a supermatrix phylogeny of early brachyceran flies (Diptera)," Systematic Entomology, (), , 2018.

Choi H, Kim H, Lee W, Lee M, Shin S, Lee S, "Taxonomic review of genus Myzus (Hemiptera: Aphididae) in the Korean Peninsula, with descriptions of three new species," Journal of Asia-Pacific Entomology, (), , 2018.

Shin S, Clarke DJ, Lemmon AR, Moriarty Lemmon E, Aitken AL, Haddad S, Farrell BD, Marvaldi AE, Oberprieler RG, McKenna DD, "Phylogenomic data yield new and robust insights into the phylogeny and evolution of weevils," Molecular Biology and Evolution, (), , 2018.

2017

Sharkey CR, Fujimoto MS, Lord NP, Shin S, McKenna DD, Suvorov A, Martin GJ, Bybee SM., "Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles," Scientific Reports, (), , 2017.

2016

McKenna DD, Scully ED, Pauchet Y, Hoover K, .... Shin S, Silva C, Torson AS, Jentzsch IM, Werren JH, Worley KC, Yocum G, Zdobnov EM, Gibbs RA, Richards S., "Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface," Genome Biology, (), , 2016.

2015

Shin S, Jung S, Heller K, Menzel F, Hong TK, Shin JS, Lee SH, Lee H, Lee S, "DNA barcoding of Bradysia (Diptera: Sciaridae) for detection of the immature stages on agricultural crops," Journal of Applied Entomology, (), , 2015.

2014

Shin S, Lee S., "A Catalog of the Sciaridae (Diptera) Recorded from the Korean Indigenous Species Survey of the National Institute of Biological Resources," Entomological Research Bulletin, (), , 2014.

Shin S, Menzel F, Heller K, Lee H, Lee S., "Review of the genus Cratyna Winnertz (Diptera: Sciaridae) in Korea, including the description of a new species," Zootaxa, (), , 2014.

Park MS, Fong JJ, Lee H, Shin S, Lee S, Lee N, Lim YW, "Determination of coleopteran insects associated with spore dispersal of Cryptoporus volvatus (Polyporaceae: Basidiomycota) in Korea.," Journal of Asia-Pacific Entomology, (), , 2014.

Shin S, Menzel F, Lee H, Lee S., "Review of the genus Zygoneura Meigen (Diptera: Sciaridae) in Korea, with an updated checklist of the World species," Journal of Asia-Pacific Entomology, (), , 2014.

2013

Shin S, Jung S, Lee H, Lee S., "Molecular identification of dipteran pests (Diptera: Sciaroidea) from shiitake mushroom," Molecular Ecology Resources, (), , 2013.

Shin S, Jung S, Menzel F, Heller K, Lee H, Lee S., "Molecular phylogeny of black fungus gnats (Diptera: Sciaroidea: Sciaridae) and the evolution of larval habitats," Molecular Phylogenetics and Evolution, (), , 2013.

2012

Shin S, Lee H, Lee S., "Dark winged fungus gnats (Diptera: Sciaridae) collected from shiitake mushroom in Korea," Journal of Asia-Pacific Entomology, (), , 2012.

2011

Shin S, Lee H, Lee S., "Two cecidomyiid gall midge (Diptera: Cecidomyiidae) pests of shiitake mushrooms (Agaricales: Marasmiaceae)," Journal of Asia-Pacific Entomology, (), , 2011.