Laboratory of Computational Structural and Systems Biology

Laboratory of Computational Structural and Systems Biology

Seoul National University

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(2025) Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm, Nature Communications
(2025) Advancing protein structure prediction beyond AlphaFold2, Current Opinion in Structural Biology
(2025) Deep learning methods for proteome-scale interaction prediction, Current Opinion in Structural Biology
(2024) Protein interactions in human pathogens revealed through deep learning, Nature Microbiology
(2024) Accurate prediction of protein–nucleic acid complexes using RoseTTAFoldNA, Nature Methods
(2023) De novo design of protein structure and function with RFdiffusion, Nature
(2023) Improving de novo protein binder design with deep learning, Nature Communications
(2023) Protein-protein interactions in the Mla lipid transport system probed by computational structure prediction and deep mutational scanning, Journal of Biological Chemistry
(2023) Top-down design of protein architectures with reinforcement learning, Science
(2023) Peptide-binding specificity prediction using fine-tuned protein structure prediction networks, Proceedings of the National Academy of Sciences

Welcome to the
"Laboratory of Computational Structural and Systems Biology"

Proteins play many critical roles by interacting with other proteins, nucleic acids, and organic molecules. The disruption or deregulation of their interactions often leads to disease. Understanding protein structures and interactions can facilitate a mechanistic understanding of their function and provide a tractable way of modulating interactions for disease treatment. Our group will develop artificial intelligence-based computational methods for 1) biomolecular modeling to reveal interactions between biomolecules in both molecular and cellular level, and 2) design of interaction modulators as potential biomolecular therapeutics. The outcomes will lead to a deeper understanding of structural mechanisms for biomolecular interactions and their functions, and provide an efficient way to design novel therapeutics targeting disease-related biomolecular interactions.